1. Assemble results of Japanese WGS sequence, in Apr. 2004
   Silkworm (p50T, 'Daizo' strain) WGS, Ramen assemble contigs
   
   
2. Assemble results of Chinese WGS sequence, in Dec. 2004
   Silkworm ('Dazao' strain) WGS contig sequences of the Southwest University
   Silkworm ('Dazao' strain) WGS scaffold sequences of the Southwest University
   
   
3. Assemble results of Japnese and Chinese data: Scaffold Build2
   

   Silkworm ('Daizo' and 'Dazao' strain) WGS, Ramen assemble Scaffold Build2 Registration sequences

   Silkworm ('Daizo' and 'Dazao' strain) WGS, Ramen assemble contigs Build2 Registration sequences

   
   
4. New Assemble results
   

   Silkworm new assembled sequences

   
   
5. Gene model of Scaffold Build2
   

   Silkworm ('Daizo' and 'Dazao' strain), Gene model by China (10/Jan/2007)

   
   
6. ESTs/Genes
   Silkworm cDNA partial sequences from KAIKOcDNA database
   Silkworm cDNA partial sequences of the Southwest University
   Silkworm cDNA partial sequences of the Zhejiang Sci-Tech University
   Ohters silkworm cDNA/Gene sequences from public database
   Silkworm EST (15/Sep/2011)
   Silkworm full-length cDNA (15/Sep/2011)
   Silkworm New GeneModel
   
7. BAC, BAC_end, and Fosmid_end
   

   Silkworm (p50T, 'Daizo' strain), Anchor 55BACs

   Silkworm (p50T, 'Daizo' strain), Fosmid End (part1)

   Silkworm (p50T, 'Daizo' strain), Fosmid End (part2)

   Silkworm (p50T, 'Daizo' strain), BAC End

   
   
8. Repetitive
   

   repetitive sequences (revised) from Scaffold Build2 using ReAS by BGI

   
   
9. MISC
   Confirmed gene set collection from WormBase
   Drosophila melanogaster full-length cDNA sequences from BDGP DGC (15-Jul-2004)
   Drosophila melanogaster EST sequences from BDGP (13-Jul-2004)
   Apis mellifera and Apis cerana cDNA partial sequences
   
   

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	Expect threathold: Expected number of chance matches in a random model. more... 1000 100 10 1 0.1 0.01 0.001 1e-03 1e-04 1e-05 1e-10 1e-20 1e-30 1e-40 1e-50 1e-100 Descriptions: The number of short descriptions of matching sequences reported to the number specified. more ... 10 50 100 250 500 1000 5000 10000 Alignments: Select the maximum number of aligned sequences to display 10 50 100 250 500 1000 5000 10000 WordSize: The length of the seed that initiates an alignment. more... 7 11 15
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	Match/Mismatch Scores: (BLASTN only) Reward and penalty for matching and mismatching bases. more... (1,-2) (1,-3) (1,-4) (2,-3) (4,-5) (1,-1) Matrix:(except BLASTN) Assigns a score for aligning pairs of residues, and determines overall alignment score. more... PAM30 PAM70 PAM250 BLOSUM80 BLOSUM62 BLOSUM45 BLOSUM50 BLOSUM90 Gap Costs (Open/Extend) Cost to create and extend a gap in an alignment. more... (4,4) (2,4) (0,4) (3,3) (6,2) (5,2) (4,2) (2,2) Ungapped Align Perform ungapped alignment only? Compositional adjustments (blastp, blastx, tblastn) Matrix adjustment method to compensate for amino acid composition of sequences. more... No composition-based statistics (0) Composition-based statistics (1) Conditional composition-based score adjustment (2) Unconditional composition-based score adjustment (3) Genetic Code (blastx, tblastx) Standard ( 1 ) Vertebrate Mitochondrial ( 2 ) Yeast Mitochondrial ( 3 ) Mold, Protozoan, and Coelenterate Mitochondrial Code and the Mycoplasma/Spiroplasma ( 4 ) Invertebrate Mitochondrial ( 5 ) Ciliate, Dasycladacean and Hexamita Nuclear ( 6 ) Echinoderm and Flatworm Mitochondrial ( 9 ) Euplotid Nuclear ( 10 ) Bacterial, Archaeal and Plant Plastid ( 11 ) Alternative Yeast Nuclear ( 12 ) Ascidian Mitochondrial ( 13 ) Alternative Flatworm Mitochondrial ( 14 ) Chlorophycean Mitochondrial ( 16 ) Trematode Mitochondrial ( 21 ) Scenedesmus obliquus Mitochondrial ( 22 ) Thraustochytrium Mitochondrial ( 23 ) Pterobranchia Mitochondrial ( 24 ) Candidate Division SR1 and Gracilibacteria ( 25 ) Pachysolen tannophilus Nuclear ( 26 ) Karyorelict Nuclear ( 27 ) Condylostoma Nuclear ( 28 ) Mesodinium Nuclear ( 29 ) Peritrich Nuclear ( 30 ) Blastocrithidia Nuclear ( 31 )