KAIKOBLAST System

1. Nucleic Acid Database Search
  1. Assemble results of Japanese WGS sequence, in Apr. 2004
    • Silkworm (p50T, 'Daizo' strain) WGS, Ramen assemble contigs

  2. Assemble results of Chinese WGS sequence, in Dec. 2004
    • Silkworm ('Dazao' strain) WGS contig sequences of the Southwest University
    • Silkworm ('Dazao' strain) WGS scaffold sequences of the Southwest University

  3. Assemble results of Japnese and Chinese data: Scaffold Build2
    • Silkworm ('Daizo' and 'Dazao' strain) WGS, Ramen assemble Scaffold Build2 Registration sequences
    • Silkworm ('Daizo' and 'Dazao' strain) WGS, Ramen assemble contigs Build2 Registration sequences

  4. Gene model of Scaffold Build2
    • Silkworm ('Daizo' and 'Dazao' strain), Gene model by China (10/Jan/2007)

  5. ESTs/Genes
    • Silkworm cDNA partial sequences from KAIKOcDNA database
    • Silkworm cDNA partial sequences of the Southwest University
    • Silkworm cDNA partial sequences of the Zhejiang Sci-Tech University
    • Ohters silkworm cDNA/Gene sequences from public database
    • Silkworm EST (15/Sep/2011)
    • Silkworm full-length cDNA (15/Sep/2011)

  6. BAC, BAC_end
    • Silkworm (p50T, 'Daizo' strain), Anchor 55BACs
    • Silkworm (p50T, 'Daizo' strain), Fosmid End (part1)
    • Silkworm (p50T, 'Daizo' strain), Fosmid End (part2)
    • Silkworm (p50T, 'Daizo' strain), BAC End

  7. Repetitive
    • repetitive sequences (revised) from Scaffold Build2 using ReAS by BGI

  8. MISC
2. Scaffold Sequence Search for KAIKObase
Silkworm ('Daizo' and 'Dazao' strain) WGS, Ramen assemble Scaffold Build2 Registration sequences


3. Amino Acid Database Search

NIAS DNA Bank