1. Nucleic Acid Database Search

1. Assemble results of Japanese WGS sequence, in Apr. 2004
   
   • Silkworm (p50T, 'Daizo' strain) WGS, Ramen assemble contigs
   
   
2. Assemble results of Chinese WGS sequence, in Dec. 2004
   
   • Silkworm ('Dazao' strain) WGS contig sequences of the Southwest University
   • Silkworm ('Dazao' strain) WGS scaffold sequences of the Southwest University
   
   
3. Assemble results of Japnese and Chinese data: Scaffold Build2
   
   • Silkworm ('Daizo' and 'Dazao' strain) WGS, Ramen assemble Scaffold Build2 Registration sequences
   • Silkworm ('Daizo' and 'Dazao' strain) WGS, Ramen assemble contigs Build2 Registration sequences
   
   
4. Gene model of Scaffold Build2
   
   • Silkworm ('Daizo' and 'Dazao' strain), Gene model by China (10/Jan/2007)
   
   
5. ESTs/Genes
   
   • Silkworm cDNA partial sequences from KAIKOcDNA database
   • Silkworm cDNA partial sequences of the Southwest University
   • Silkworm cDNA partial sequences of the Zhejiang Sci-Tech University
   • Ohters silkworm cDNA/Gene sequences from public database
   • Silkworm EST (15/Sep/2011)
   • Silkworm full-length cDNA (15/Sep/2011)
   
   
6. BAC, BAC_end
   
   • Silkworm (p50T, 'Daizo' strain), Anchor 55BACs
   • Silkworm (p50T, 'Daizo' strain), Fosmid End (part1)
   • Silkworm (p50T, 'Daizo' strain), Fosmid End (part2)
   • Silkworm (p50T, 'Daizo' strain), BAC End
   
   
7. Repetitive
   
   • repetitive sequences (revised) from Scaffold Build2 using ReAS by BGI
   
   
8. MISC
   
   • Confirmed gene set collection from WormBase
   • Drosophila melanogaster full-length cDNA sequences from BDGP DGC (15-Jul-2004)
   • Drosophila melanogaster EST sequences from BDGP (13-Jul-2004)
   • Apis mellifera and Apis cerana cDNA partial sequences

2. Scaffold Sequence Search for KAIKObase

Silkworm ('Daizo' and 'Dazao' strain) WGS, Ramen assemble Scaffold Build2 Registration sequences

3. Amino Acid Database Search

• Wormbase Amino Acid Sequence database
• Protein Information Resource (PIR) sequence database
• SwissProt sequence database
• NCBI non-redundant protein database
• Silkworm (p50, 'Daizo' strain), Gene model by China (10/Jan/2007)
    (52,340 Amino-Acid sequences have "-" in sequence, so we replaced -" by "X")